PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047118m | ||||||||
Common Name | CISIN_1g047118mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 26256.1 Da PI: 8.954 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.5 | 5.8e-35 | 18 | 116 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++r+kC++dC la+yfpa+++k+f++vhk+FG+snv+k+++++++ee r+++++sl++eA +r++dPv+G +g ++++ ++l+ + orange1.1g047118m 18 ACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTKIVQNANDEEsRQKVVDSLIWEAFWRQKDPVSGPYGEYQRVCEELKLYR 109 7************************************************77776**********************************9998 PP DUF260 92 aelallk 98 +++ +++ orange1.1g047118m 110 SQTLMQN 116 8876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.055 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-32 | 18 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MMQRNNNNSS TTSSVQSACA ACKHQRKKCS EDCKLARYFP ANRSKEFQAV HKVFGVSNVT 60 KIVQNANDEE SRQKVVDSLI WEAFWRQKDP VSGPYGEYQR VCEELKLYRS QTLMQNHNHR 120 NQNHQLVQLP GQGGMIYRSS SQPLMGWNNG MNTNNGISVS GNEQLDYNNH DNGNNSIVDL 180 DTYSFASHFV QSPKNLKQER EVGTVVIPLQ QQQQQRQQPS INSGFSQHHI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-18 | 9 | 96 | 2 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-18 | 9 | 96 | 2 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024950727.1 | 1e-170 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A067DW22 | 1e-171 | A0A067DW22_CITSI; Uncharacterized protein | ||||
STRING | XP_006469134.1 | 1e-169 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-44 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047118m |