PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046996m
Common NameCISIN_1g046996mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 364aa    MW: 41670.2 Da    PI: 7.8283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046996mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-50251502128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++
  orange1.1g046996m  25 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIK 115
                        79***************************.89***************8778899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        s++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  orange1.1g046996m 116 SENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 150
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.91224171IPR003441NAC domain
SuperFamilySSF1019412.09E-5624171IPR003441NAC domain
PfamPF023653.6E-2526150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSNNNESNDN ENNDNKDDHE HDVVMPGFRF HPTEEELVEF YLRRKVEGKR FNVELITFLD  60
LYRYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA DRMIKSENSR  120
SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCRVYK RPGVEDHPSL  180
PRSLPTSRAS SSRSVSSMSA QSDKRLDPHH HHQFGIERFQ ALSGQSSQQQ MDIAAEKMST  240
NTDQTDRSSS CSDVTTVLGL SKQNVYRPNM ASVSSALGLP PSLMEEQAAS LTLVPNCTTT  300
LFPVALSTSS SSAASSNATD EFHRLLAYQQ ASMNHQQQYY NYQHHHQQQQ HHSHFPQLPP  360
QSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-562617119165NO APICAL MERISTEM PROTEIN
1ut4_B3e-562617119165NO APICAL MERISTEM PROTEIN
1ut7_A3e-562617119165NO APICAL MERISTEM PROTEIN
1ut7_B3e-562617119165NO APICAL MERISTEM PROTEIN
3swm_A4e-562617122168NAC domain-containing protein 19
3swm_B4e-562617122168NAC domain-containing protein 19
3swm_C4e-562617122168NAC domain-containing protein 19
3swm_D4e-562617122168NAC domain-containing protein 19
3swp_A4e-562617122168NAC domain-containing protein 19
3swp_B4e-562617122168NAC domain-containing protein 19
3swp_C4e-562617122168NAC domain-containing protein 19
3swp_D4e-562617122168NAC domain-containing protein 19
4dul_A3e-562617119165NAC domain-containing protein 19
4dul_B3e-562617119165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431380.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-117NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A067DBI20.0A0A067DBI2_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006431380.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]