 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g046859m |
| Common Name | CISIN_1g046859mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
MYB |
| Protein Properties |
Length: 459aa MW: 52573.6 Da PI: 6.6911 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g046859m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 213 | 259 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WTteEd ll+++v q+G + W+ Ia++++ gR +kqc++rw+++l
orange1.1g046859m 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 259
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 55.8 | 1e-17 | 267 | 307 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
orange1.1g046859m 267 IWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 307
6*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MELDTKLRDQ AHHHASQQQP IFLSENYMKP ELPFEVPSSK GTTITNNLQD FDRHHHDLDD 60
DDGHHHLFVN LNGSSSTNPF SVHTSCFESL DAFPYNYSSS SNFDFYECKP FADHNYSSGN 120
GQVMDNFQSG GYLNYHQQQQ VNPVDILGSD HRSHMQLDFQ EMKPVNFLVS DEVSCVSAGN 180
GYYKKAGMDK NNNRAYHSVR KTMKIGKKSN VVKGQWTTEE DRLLIRLVDQ FGIRKWSHIA 240
QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDKALIEAH AEIGNKWAEI AKRLPGRTEN 300
SIKNHWNATK RRQFSKRKCR SKYPRASLLQ DYIKSLNLDA AGSSKHQRKN SSNINANNKS 360
KAATKSSPPA AAEQDFCRSD HLVPDFDFNE VPDFDFDDKL FDENCSIDSL IEEMTCAPVV 420
DHQKSLDMKV PPLDVPPVME FEVKKELDLV EMISQANL*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
