PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046190m
Common NameCISIN_1g046190mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 301aa    MW: 33408.1 Da    PI: 4.8987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046190mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-192372255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  orange1.1g046190m 23 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 72
                       789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-312279No hitNo description
PROSITE profilePS5103219.5332380IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-192380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-272379IPR001471AP2/ERF domain
SMARTSM003808.5E-352386IPR001471AP2/ERF domain
PfamPF008473.5E-142372IPR001471AP2/ERF domain
PRINTSPR003677.8E-82435IPR001471AP2/ERF domain
PRINTSPR003677.8E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSWGQVMEEA ALSLCGGRRG RKRFVGVRQR PSGRWVAEIK DTIQKIRVWL GTYDTAEEAA  60
RAYDEAACLL RGANTRTNFW PCSLSSSTRP PALPSRITNL LLHRLKARNS RNDQPTATSI  120
AMTQDQEAAN NLLEDTGQSA DNYFNVAQER TNCKKEKIDF RFVDALGAAS ACTYEYSPFE  180
IAQEMMGSME KEDGSSSSED EGDPTMQLIR ETMKRMKYER NFSASLYAFN GISECLKMKL  240
GCSDNNDPLS TFTISNNYEE DQDQKEKEND VVVGTSLVST SIQTAAGSSS STASSFSSTK  300
E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957346.10.0uncharacterized protein LOC112499022
TrEMBLA0A067GWG60.0A0A067GWG6_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006438759.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-13related to AP2 11