PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046093m | ||||||||
Common Name | CISIN_1g046093mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 475aa MW: 52890.9 Da PI: 4.4424 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l ++++ G ++W++ +++ g+ R++k+c++rw +yl orange1.1g046093m 14 KGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ TteE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l orange1.1g046093m 67 RGNITTEEEETIIKLHASLGNR-WSVIASHLP-GRTDNELKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.111 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.519 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-7 | 80 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MGRTPCCEKV GLKKGKWTAK EDEILTKYIQ ANGIESWRSL PKKAGLLRCG KSCRLRWVNY 60 LRTDLRRGNI TTEEEETIIK LHASLGNRWS VIASHLPGRT DNELKNYWNT HLSKKIHTFQ 120 GPVGGETLSL PKMVDVASAS AAIDKRKAGK TSRCATKKNK SYIINKDDVT SNVPTQRPQV 180 NGSTSTDDIG NVSAQRPEAY ASTDVGYVST RRPQVNISID NDANVSTPSH RPEENVSIEE 240 AATPLPATPA QEKEALPRTV IEGCVDLDPY AEDEEILMDP IASNPCQETG LVSSEKRESF 300 VVCSGTEETT MNISILCLCP RGEEEQKETE VLAPFDEDID AETLCFNNLT DLTEVWTLLE 360 ETENCAKNII REETEIGTRI VANNMAKSEE LESANLGATE ESVACSSVTS FFDDNNFDWD 420 WESVVQGHDR QCDEENNIFS RPWETDNMAE RKSHEIGEVL DYDMPNDMVA WLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-21 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
3zqc_A | 4e-21 | 14 | 118 | 2 | 105 | MYB3 |
3zqc_D | 4e-21 | 14 | 118 | 2 | 105 | MYB3 |
3zqc_G | 4e-21 | 14 | 118 | 2 | 105 | MYB3 |
3zqc_J | 4e-21 | 14 | 118 | 2 | 105 | MYB3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444458.1 | 0.0 | transcription factor MYB41 | ||||
TrEMBL | A0A067HGI6 | 0.0 | A0A067HGI6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TBM6 | 0.0 | V4TBM6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006444458.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22795 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 7e-66 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046093m |