PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046075m
Common NameCISIN_1g046075mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 329aa    MW: 37356.8 Da    PI: 5.955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046075mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-191562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lvd++ ++G g+W++ ++  g++R++k+c++rw +yl
  orange1.1g046075m 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
2Myb_DNA-binding30.49e-1068121147
                        TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 
                        rgr+++eE+ ++++++  lG++            I  +++ gRt++++k++w+++
  orange1.1g046075m  68 RGRFSEEEERIIINLHSVLGNKyfsfnmhiYSIEIIYHLP-GRTDNEIKNFWNTH 121
                        89**********************9999876667888999.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9211066IPR017930Myb domain
SuperFamilySSF466893.21E-2612118IPR009057Homeodomain-like
SMARTSM007178.8E-151464IPR001005SANT/Myb domain
PfamPF002492.4E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241669IPR009057Homeodomain-like
CDDcd001672.08E-111762No hitNo description
PROSITE profilePS5129410.81467126IPR017930Myb domain
SMARTSM007173.7E-667124IPR001005SANT/Myb domain
PfamPF002494.9E-768121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-1970125IPR009057Homeodomain-like
CDDcd001672.08E-770122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRSPCCDES RSLKKGPWTP EEDQKLVDYI GRHGHGSWNA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIRRGR FSEEEERIII NLHSVLGNKY FSFNMHIYSI EIIYHLPGRT DNEIKNFWNT  120
HIRKKFLQMG IDPITHKPRV DLSQFLNLPQ TLYSSPFGNL STSPFGNNNA LKLQTDATQL  180
ARIELLQNLL ELMNTSAVIP NVGNYSGALG FDNLNQPFQN VMAQATLQNP GSSPQTTGEL  240
EAQINSLSWF EAGLEQFEGL SDHDVISNEN SSYGHNIQQE CKLPPMVNAS CDETPSLSQT  300
DHHFAAYEAW EKFIDDETSD SYWKKFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27131265108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432792.10.0transcription factor MYB39
RefseqXP_006471607.10.0transcription factor MYB39-like
TrEMBLA0A067EDA80.0A0A067EDA8_CITSI; Uncharacterized protein
STRINGXP_006471607.10.0(Citrus sinensis)
STRINGXP_006432792.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-83myb domain protein 9