PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046003m
Common NameCISIN_1g046003mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 459aa    MW: 52124.6 Da    PI: 4.5088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046003mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.32.9e-2781411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 
                        lp Gf+F+P+deelv +yLkkk++g +++l+e  i+++++y+ +P ++       + + ++++yfF++ +kk+++g+r  r++    g W+ 
  orange1.1g046003m   8 LPHGFQFRPSDEELVEHYLKKKISGIPIPLAEYfITDCNLYEKKPTEIWDshggPFLNADEDMYFFTQLKKKSSKGSRIDRKVGssGGAWQG 99 
                        699************************9998888**************63245533347899*******************75544899*** PP

                NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  orange1.1g046003m 100 EDAGKDIVSGqSKIKIGSKKRFRYEK--KGCEDHGAWIMHEYTL 141
                        *******99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-325158IPR003441NAC domain
PROSITE profilePS5100534.9368159IPR003441NAC domain
PfamPF023654.2E-199141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LVEHYLKKKI SGIPIPLAEY FITDCNLYEK KPTEIWDSHG  60
GPFLNADEDM YFFTQLKKKS SKGSRIDRKV GSSGGAWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKKGCED HGAWIMHEYT LHLPKNQATN YVLCRLRKNQ PTGPDKKFCS AKKRKLKDFQ  180
ENNNQSEQVT DTEMERVLTH QQNRQQNDVH YQEVSCSITG MMSEQSLSGG MGFASSVAEH  240
SAAEHSAVTD QMQQYQCQQI LIQNSECHYE PSMEMMMSNF DQMLYNQQCD SGNNMLQSRE  300
TGGNCHCDSE SIADAMAVPE SLVQQEDCDA LPELIEEDYS FLEELLCNDA QEPIGDGESI  360
DETDGMDHSS TVAEKQFEAF VVVLDQSVQN SSLQENQQQR ECQSKETFAI SSDHDYESSI  420
SQRRASGGVD YELESIHQLL LSDQNDCDLM LDLEHIWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-15816015171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387713.10.0NAC transcription factor 56-like
TrEMBLA0A067ERL10.0A0A067ERL1_CITSI; Uncharacterized protein
STRINGXP_006437042.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.15e-18NAC domain containing protein 45