PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045827m | ||||||||
Common Name | CISIN_1g045827mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 26134.9 Da PI: 7.8929 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.5 | 2.7e-32 | 52 | 170 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F Ptdeelv ++L +k++ +++ ++i+e++ ++Pw+L+ ++ + ++wyfFs+ + +r+t +gyWk+ +++v orange1.1g045827m 52 LPPGFKFLPTDEELVLHFLYPKASLLPCHP-NIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIED--------KRVTGNGYWKQLDFEEPV 134 79*************************999.89**************976667899******9866........599*************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+++g+kk +vf g+ap g++t+W+m+ey+l orange1.1g045827m 135 INSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHL 170 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-42 | 47 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.619 | 52 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-21 | 53 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
EEFQYFKKSK PITKASTFHI VPVKYINSPS LSYIRSRKKY LIINMCDRTI NLPPGFKFLP 60 TDEELVLHFL YPKASLLPCH PNIIPELNPQ LHDPWQLNGR ALCSGNRWYF FSQIEDKRVT 120 GNGYWKQLDF EEPVINSAGK KIGMKKYFVF CVGEAPLGVE TNWIMQEYHL CSCGASANKS 180 YKRRGNRILV SEGCCKWVLC RVYEEDGNSK GFCHGDDDDD DNGTELS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-32 | 50 | 210 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-32 | 50 | 210 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-32 | 50 | 210 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-32 | 50 | 210 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-32 | 50 | 210 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 7e-32 | 50 | 210 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-32 | 50 | 210 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465057.1 | 1e-137 | NAC domain-containing protein 104-like isoform X2 | ||||
Refseq | XP_024040751.1 | 1e-137 | NAC domain-containing protein 104 | ||||
TrEMBL | A0A067CZI9 | 1e-170 | A0A067CZI9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006465056.1 | 1e-136 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-49 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045827m |