PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045762m
Common NameCISIN_1g045762mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 374aa    MW: 41521.6 Da    PI: 6.8294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045762mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.24.5e-13683721374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPi 90 
                        lv+lLl+cAeav+++d+ la+++L +l+  +sp gd+mqR+a++fteAL+arla + ++  ++ +p++ s  + ns e+l+++++ ++++P+
  orange1.1g045762m   8 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSpfPPNSLEVLKIYQIVYQACPY 99 
                        68****************************************************9544433333333333003569**************** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        +kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+ +etg+ L+++A++l+vpfef++ v
  orange1.1g045762m 100 VKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGA----TIESAKETGRCLTELAHSLHVPFEFHP-V 186
                        ***********************************************************....99*************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         ++ledl++++++ + gEalaVn v +lhr++  s +l +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a+
  orange1.1g045762m 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVP--SNCLGN----LLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDAT 272
                        *******************************9..666666....************************************************ PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +p++s +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e  GF+ vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+
  orange1.1g045762m 273 FPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRA 364
                        ******************************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        L+++SaWr
  orange1.1g045762m 365 LLAASAWR 372
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.5481352IPR005202Transcription factor GRAS
PfamPF035141.5E-1338372IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
EQDSGLQLVH LLLACAEAVA KEDFMLARRY LHHLNRVVSP LGDSMQRVAS CFTEALSARL  60
AATLTTKPST STPTPFSPFP PNSLEVLKIY QIVYQACPYV KFAHFTANQA IFEAFEAEER  120
VHVIDLDILQ GYQWPAFMQA LAARPGGAPF LRITGVGATI ESAKETGRCL TELAHSLHVP  180
FEFHPVGEQL EDLKPHMFNR RVGEALAVNA VNRLHRVPSN CLGNLLAMIR DQAPNIVTIV  240
EQEASHNGPY FLGRFLEALH YYSAIFDSLD ATFPPDSAQR AKVEQYIFAP EIRNIVACEG  300
GERTARHERL EKWRKIMEGK GFRGVPLSAN AVTQSKILLG LYSCDGYRLT EDNGCLLLGW  360
QDRALLAASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1021537126378Protein SCARECROW
5b3h_A1e-1021537125377Protein SCARECROW
5b3h_D1e-1021537125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447014.10.0DELLA protein RGL1
RefseqXP_006470106.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A067F9100.0A0A067F910_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4W2V40.0V4W2V4_9ROSI; Uncharacterized protein
STRINGXP_006470106.10.0(Citrus sinensis)
STRINGXP_006447014.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]