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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g045411m |
| Common Name | CISIN_1g045411mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB |
| Protein Properties |
Length: 390aa MW: 43553.1 Da PI: 4.777 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g045411m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
orange1.1g045411m 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
89******************************99************97 PP
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| 2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
orange1.1g045411m 69 RGNFTQEEEDTIIRLHESLGNR-WSKIASQLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MGKGRAPCCD KSQVKRGPWS PGEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60
NYLRPDVKRG NFTQEEEDTI IRLHESLGNR WSKIASQLPG RTDNEIKNVW NTHLKKRLSF 120
RDVKKDQESK ESSSISSPSS SSSSTIISSG KRRADTELDE HQCDQNNYVP KKPREGHGSM 180
TVSEKLVQQS SETEESNQIN TSKGVVMMTK ELLDSSCSSD NSVVSNSSQV DATRPKDQMG 240
TSQFGFSEPY DVAIGLNNLE EVNKPEIISI SDTGLEIPLE CDFDFWSMLD NLGPFQSHEV 300
EASQSTSFGE ASDNSREVDS RTWFQYLENE LGLEATTEDE IQNSAKVAAA ATADPIPQET 360
YETLLKPEVD PGVTYFQLWN ASLQSSVCE*
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