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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g045357m |
| Common Name | CISIN_1g045357mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LBD |
| Protein Properties |
Length: 245aa MW: 26629.1 Da PI: 8.6465 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g045357m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 91.6 | 9.1e-29 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
+C++C++lr++C +dC++ p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++
orange1.1g045357m 2 SCNGCRILRKGCGDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQ 93
6*********************9998667889************************************************************ PP
DUF260 88 eqlkaelallke 99
+q++++++l ++
orange1.1g045357m 94 CQAAVDAVLKGK 105
****99988765 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MSCNGCRILR KGCGDDCIIK PCLDWIKSSD AQANATLFLA KFYGRAGLIN LIEAGPQHLR 60
PAIFKSLLYE ACGRIVDPIS GSVGLLWSGK WEQCQAAVDA VLKGKTITQN PSSSSSSSSS 120
NNNAPAAAPW TLNVQSPPLK IYDIRHVSKD PSAANCSDKT KARAKRSWNR RPKAPVVGRE 180
SIQDQSSWLQ SQVISRSEDD YESIFSVETV EGSLDVNRNK QRWVQNGNGD VGLELTLCLP 240
PTNH*
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