PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045316m
Common NameCISIN_1g045316mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 569aa    MW: 62112 Da    PI: 5.2641
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045316mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017407429123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C +C+ksF  +  L  H  +H
  orange1.1g045316m 407 YSCLICNKSFDKHQALGGHVASH 429
                        99*********999999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.80395132IPR007087Zinc finger, C2H2
SMARTSM003559295115IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.32E-595117No hitNo description
PfamPF139124.2E-896115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-5150177No hitNo description
PROSITE profilePS501578.974155182IPR007087Zinc finger, C2H2
PfamPF139121.2E-4155179IPR007087Zinc finger, C2H2
SMARTSM003550.28155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-7406429No hitNo description
PROSITE profilePS5015710.492407434IPR007087Zinc finger, C2H2
PfamPF139121.6E-4407430IPR007087Zinc finger, C2H2
SMARTSM003550.17407429IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-7478505No hitNo description
PROSITE profilePS501579.224483505IPR007087Zinc finger, C2H2
PfamPF139128.7E-12483506IPR007087Zinc finger, C2H2
SMARTSM003550.06483505IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280485505IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAEEDQEDQE QPLPAAVAVE AAQEKPNQLV SEADDDTEIT KGSSLSLKLK IPITKPPAAA  60
AAEADDRQFM EEDLLLQREQ EQDQQDRGGV LGLPRTCSEC GKQFTSGKAL GGHKRACLQK  120
IKNGTTHNNQ NPRLIKKAVA VKPEEAGEEG NINNHICYVC HQSFRSVKSL YGHMRKHPER  180
EWRGVQPPKH YLLNHRRQHP SPSSSPTIHY RLSRDNRDHD HYDDDGYDVD GSMGSGGEDL  240
VESLRGWSAK RKRGQRLIMS SSSDEDEDED EEEAMQQAVS DLLLLAQLSA DDCNDNKEQR  300
GTFDHHRVVS SVDSGYGVLK IKDNNKIDDD NDEDDEREKK KGNVEMKDGN GLGFDNCNSE  360
DMWTKKQQKK NKRRRLNELD DAVLEGTTAG GGALKEEPVV MSTAQTYSCL ICNKSFDKHQ  420
ALGGHVASHN KNKNVKESSS ASAAAEDSKG EDKLAAAASD EETGESSREL AAAAAGGGGS  480
SEHKCNICNK IFPTGQALGG HKRCHWTGPA EALSSSSQVT TSAGEVTQRA PSPSRRVHDF  540
DLNDTPPEYY QFHGCEAAGP SAAAATIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452771.10.0transcriptional regulator ATRX homolog
TrEMBLA0A067GF110.0A0A067GF11_CITSI; Uncharacterized protein
STRINGXP_006452771.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-19C2H2 family protein