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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044976m | ||||||||
Common Name | CISIN_1g044976mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 847aa MW: 94511.2 Da PI: 6.333 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.1 | 2.2e-55 | 14 | 127 | 4 | 116 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 e ++rwlk+ e++ iL+n++k+elt+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg++v E+he+LKvg+ e+l+cyYah+e+np+f orange1.1g044976m 14 EaQTRWLKPAEVLFILQNYDKYELTQEPPQKPNSGSLFLFNKRVLRFFRKDGHNWRKKKDGRAVGEAHERLKVGNAEALNCYYAHGEQNPNF 105 5599**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L+ ++e+ivlvhy+e orange1.1g044976m 106 QRRSYWMLDPAYEHIVLVHYRE 127 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.586 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.7E-78 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.2E-49 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.0E-9 | 284 | 371 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 2.18E-4 | 285 | 368 | No hit | No description |
SuperFamily | SSF81296 | 2.8E-17 | 285 | 368 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 6.0E-9 | 285 | 361 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 1.9E-15 | 478 | 574 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.626 | 480 | 572 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.13E-16 | 482 | 574 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.85E-10 | 485 | 572 | No hit | No description |
Pfam | PF12796 | 2.1E-9 | 496 | 573 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.4E-4 | 513 | 542 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.381 | 513 | 545 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 750 | 552 | 581 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 15 | 630 | 652 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.041 | 631 | 660 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.92E-7 | 681 | 735 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.23 | 688 | 710 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.206 | 689 | 718 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.012 | 691 | 709 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 9.1E-4 | 711 | 733 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.285 | 712 | 737 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.6E-5 | 714 | 733 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MMLAGYDVDF LFREAQTRWL KPAEVLFILQ NYDKYELTQE PPQKPNSGSL FLFNKRVLRF 60 FRKDGHNWRK KKDGRAVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI 120 VLVHYREITE GRPSPGSVVV SPGASSTFTL SPASYVTPNP GPTSLKSDFY EPYQSISSPS 180 SIEVTSEMAS KDNAVDSKGG STSSEAEVSQ ALRKLKEQLS LNDDMFEEID SLSRQDLDSE 240 SKISQQDQNS TNQFQLHNNF YQDHIGVPLE ADLRLTVAQK QKFAIREISP DWGYANESTK 300 VIIVGSFLCD PSESAWSCMF GDTEVPLQII QEGVIRCEAP PRLPGKVTLC ITSGNRESCS 360 EVKEFDYRVK PNSYDNWSQK EATKSHDELL LLVRFVQMLL SDSSVNKEEG VELGYHELRG 420 MKADDDLWGQ VIDSLLVGSG NSLDTIDWLL QEVLKDKLQQ WLSSKSLRES DQPGCSLSKK 480 EQGIIHMVAG LGFEWALNPI LSCGVSINFR DINGWTALHW AARFGREKMV AALLASGASA 540 GAVTDPNPLD PTGRTPAFIA ASSGHKGLAG YLSEVALTSH LSSLTLEESE LSKNSAEVQA 600 EITVNSISNG NISSTEDQLS LKDTLAAVRN AAQAAARIQS AFRAHSFRKR QQRDLAAIGA 660 SLDEYGINPD DIPGLSAISK LAFRNARDHN SAALSIQKKY RGWKGRKDYL AIRQKVVKIQ 720 AHVRGYQVRK KYKVIWAVGV LDKVILRWRR KGVGLRGFRP ETESNDESDD EDILKVFRRQ 780 KVDATIDESV SRVLSMVDSP TARNQYRRML ERYRQAKAEL GETSEAAALS AGDAVDMDDE 840 STYRFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024041283.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A067GQG9 | 0.0 | A0A067GQG9_CITSI; Uncharacterized protein | ||||
STRING | XP_006438003.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044976m |
Publications ? help Back to Top | |||
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