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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044959m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 160aa MW: 18486.2 Da PI: 10.6659 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.7 | 5.8e-28 | 2 | 53 | 6 | 58 |
ZF-HD_dimer 6 YkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 Y+eC++NhAas+G +a+DGCgEf+++ g++gt++a++CaACgCHR+FHR+e + orange1.1g044959m 2 YRECRRNHAASIGRYAYDGCGEFLKA-GKDGTKEAFHCAACGCHRSFHRKELS 53 *************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 24.22 | 2 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.1E-26 | 2 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-24 | 2 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-15 | 2 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-22 | 64 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.7E-13 | 65 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.778 | 73 | 133 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 4.8E-24 | 76 | 131 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
SYRECRRNHA ASIGRYAYDG CGEFLKAGKD GTKEAFHCAA CGCHRSFHRK ELSLSVASIH 60 RRRRHHDHEH KNYKAKTKRT KITEEQKSKM RRFADKLGWK PQRHDEEEVG KFCGEVGITR 120 KMFKVWLNNN RRRPVPVRVP EKCRAASVVG VKNLLAAEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-14 | 79 | 131 | 21 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431739.1 | 1e-115 | zinc-finger homeodomain protein 5 | ||||
Swissprot | Q9SB61 | 4e-35 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2H5Q928 | 1e-114 | A0A2H5Q928_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UZS2 | 1e-114 | V4UZS2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431739.1 | 1e-114 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18668 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-33 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044959m |
Publications ? help Back to Top | |||
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