PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044722m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 273aa    MW: 31320.8 Da    PI: 8.8629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044722mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.14.7e-29137191155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+ Wt++LHe+Fve+v++LGGsekAtPk+il+lmk k L++ +vkSHLQkYR+
  orange1.1g044722m 137 KKRITWTKDLHEHFVECVNRLGGSEKATPKAILKLMKSKELSILQVKSHLQKYRS 191
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.714134194IPR017930Myb domain
SuperFamilySSF466894.48E-16135191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-25135192IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-23137192IPR006447Myb domain, plants
PfamPF002496.2E-8141190IPR001005SANT/Myb domain
PfamPF143792.0E-13222268IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEAQSQEKQN LEPGKMPSSI ISSYHLQELA SAFYLTDQCF FGFHQNQHKN NEVIEASLPP  60
SNQFSGDNFS KKLSELDTLE SLVLSSNRNS KFPRKNSSFP TPSESSQNTK NMSIFSSEEK  120
HSCGLISDSY RHILSNKKRI TWTKDLHEHF VECVNRLGGS EKATPKAILK LMKSKELSIL  180
QVKSHLQKYR SEKLISDQSL QGFPEKTVCI NDIPQLYMKM GMQIREALQL QLELEKHLHD  240
QLEMQMNLQK LIEDQGKQVK MMLEKQLKSN QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-18137193258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.113070.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024949055.10.0protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A067E4M31e-178A0A067E4M3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006429843.11e-172(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2753133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-38G2-like family protein