PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044584m
Common NameCISIN_1g044584mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 224aa    MW: 24285 Da    PI: 6.8023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044584mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-19102153256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        gy+GVr+++ +g+++Ae rdp++ng  +r +lg++ t+e+Aa a+++a+ kl+g+
  orange1.1g044584m 102 GYRGVRRRP-WGKYAAEMRDPKKNG--ARAWLGTYETPEDAAMAYDRAAFKLRGA 153
                        8********.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-13102152IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23102161IPR016177DNA-binding domain
PROSITE profilePS5103223.854102160IPR001471AP2/ERF domain
SMARTSM003801.3E-34102166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-30103161IPR001471AP2/ERF domain
PRINTSPR003671.5E-13103114IPR001471AP2/ERF domain
CDDcd000181.26E-29103162No hitNo description
PRINTSPR003671.5E-13142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MYGVSSFGFE DPDIGLLESI QEYLLTDDIF EEAPAAIKSE NGEPLTSSPH HSSFMSSLWS  60
DLLPVEDDLA SGSASIVGSN PFDGNVIDSN VMLKHDPRRG VGYRGVRRRP WGKYAAEMRD  120
PKKNGARAWL GTYETPEDAA MAYDRAAFKL RGAKAKLNFP HLIGSAHCRE PIRVNPRRRP  180
QSLDSSSSSS SSSSGTSTTA FSNSKISASA SAAVDHQFVI NWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2899165268ATERF1
3gcc_A1e-2899165268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.30059e-92flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015381529.11e-142ethylene-responsive transcription factor 2-like
RefseqXP_024045080.11e-142ethylene-responsive transcription factor 2
TrEMBLA0A067HCE41e-163A0A067HCE4_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-37ethylene-responsive element binding factor 13