PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043602m
Common NameCISIN_1g043602mg, LOC102618200
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 353aa    MW: 39870.1 Da    PI: 6.9169
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043602mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2173132357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eql++Le+l+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  orange1.1g043602m  73 SRWNPTPEQLRTLEDLYRRgTRTPSADQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 132
                        7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.7e-3772134365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Le+ly++G+rtP++++iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  orange1.1g043602m  72 SSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.4E-570137IPR001356Homeobox domain
PfamPF000463.2E-1973132IPR001356Homeobox domain
SuperFamilySSF466897.27E-1373139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-973132IPR009057Homeodomain-like
CDDcd000868.69E-774134No hitNo description
PROSITE profilePS5007110.91678133IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MWMMGYNDSG DSFNGRKLRP LIPRPLPTTT AINNNPSRIH GADFFGLNHH LGSHFGEQNK  60
REFSSTPPVV VSSRWNPTPE QLRTLEDLYR RGTRTPSADQ IQHITAQLRR FGKIEGKNVF  120
YWFQNHKARE RQKRRRQMES SPADHHHHNN NNNNLDIEIF KESAASKTGF EIEQTKNWAA  180
PTNCSTLAEE SVSAQRSTKV ATAEYNRQGG WVQFDEAAVG EIQQQRQCFV ERNATWQMMQ  240
YCSCPHQTAP TPTAMDQIQL IKGAHDLSIF ISPYKENGHG FNNCLNHNIV NDEEDHGCGE  300
SQTLQLFPLR NGGSSDDGID DNLGKATDVS VAAIDANNSN PCQFFEFLPL KN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451629.10.0WUSCHEL-related homeobox 1
RefseqXP_006490833.20.0WUSCHEL-related homeobox 1
TrEMBLA0A067F9010.0A0A067F901_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3270.0A0A2H5Q327_CITUN; Uncharacterized protein
TrEMBLV4WEA80.0V4WEA8_9ROSI; Uncharacterized protein
STRINGXP_006451629.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-56WUSCHEL related homeobox 1