PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043499m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 397aa    MW: 45550.1 Da    PI: 9.8598
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043499mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.38e-2073163198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv +ps v +++ l++p+kf++++g +   s   tl+ ++gr+W+v l  rk +++++l++GW +F++ + + +g f+vFk+ ++s+f  
  orange1.1g043499m  73 FFKVILPSTVQEKK-LRIPRKFVKRFGDE--LSAVATLNVPNGRVWQVGL--RKDGRKIWLQDGWDNFAEYHSIAVGYFLVFKYAKNSTF-- 157
                        99**********98.********999865..8999***************..********************************999998.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v vf+
  orange1.1g043499m 158 DVLVFD 163
                        777765 PP
2B346.95e-153113911196
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         + + +++p kf ++h +   +++ ++l+d++g++W  +l++  ++++  +++GW  F k ++Lk+g ++vF+l++ ++  l+v++
  orange1.1g043499m 311 KRYSYMYVPSKFSKKHLIR--GTRSIKLQDSDGKEWPAQLTW-SSGCG--IKGGWPAFSKYKNLKQGHVCVFELIKAKDILLKVSI 391
                        455679**********555..4457***************64.44444..9***********************998877677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2768167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2569167IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-2172163No hitNo description
PROSITE profilePS5086314.14272165IPR003340B3 DNA binding domain
PfamPF023622.2E-1773161IPR003340B3 DNA binding domain
SMARTSM010191.3E-1873165IPR003340B3 DNA binding domain
CDDcd100175.09E-15294392No hitNo description
Gene3DG3DSA:2.40.330.103.4E-20296393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-18296391IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603301395IPR003340B3 DNA binding domain
SMARTSM010194.7E-10303395IPR003340B3 DNA binding domain
PfamPF023622.4E-13311392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MPEDMHQQLD NFRMLRRLIK IFNEPDPNNR WKLKGASTIK QKFLIQKGLY TTVANNNVKQ  60
MAGGNRRAET SHFFKVILPS TVQEKKLRIP RKFVKRFGDE LSAVATLNVP NGRVWQVGLR  120
KDGRKIWLQD GWDNFAEYHS IAVGYFLVFK YAKNSTFDVL VFDMTACEID YPYDYEETES  180
EEGDEMETEN SVEILSFTKM NTPPVQENQV KPGSKPEKKK IGGIKLETAT NSREKKRCPT  240
HGNEHGKLKK AAYHEVETDS SDGDQVFEEM GIFMSEGHRY LSVEERQSLV TAVRLFKPQN  300
PSFVDILRSK KRYSYMYVPS KFSKKHLIRG TRSIKLQDSD GKEWPAQLTW SSGCGIKGGW  360
PAFSKYKNLK QGHVCVFELI KAKDILLKVS IHASSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1727539621144B3 domain-containing transcription factor VRN1
4i1k_B2e-1727539621144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479392.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_024035724.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035725.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035726.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A2H5PHN80.0A0A2H5PHN8_CITUN; Uncharacterized protein
STRINGXP_006479392.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-57B3 family protein