PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043383m
Common NameCISIN_1g043383mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 87aa    MW: 9721.25 Da    PI: 10.8099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043383mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-293180251
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                       prlrWt +LH++Fv+a+e+LGG+e+AtPk +l++m+vk+Lt++hvkSHLQ
  orange1.1g043383m 31 PRLRWTADLHRSFVHAIERLGGEERATPKMVLQIMGVKDLTISHVKSHLQ 80
                       8************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-272780IPR009057Homeodomain-like
SuperFamilySSF466899.32E-142981IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-223181IPR006447Myb domain, plants
PfamPF002494.8E-63280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MKSVDSAETS SCVNSSLKSP SVRPYVRSKM PRLRWTADLH RSFVHAIERL GGEERATPKM  60
VLQIMGVKDL TISHVKSHLQ VSQNASM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-183285356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-183285356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-183285356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-183285356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951460.11e-42probable transcription factor KAN4
SwissprotQ700D92e-26MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A067GEZ73e-57A0A067GEZ7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006449755.17e-40(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-30G2-like family protein