PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043031m
Common NameCISIN_1g043031mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 425aa    MW: 47971.4 Da    PI: 6.6047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043031mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.9e-80494201374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn....sseelaalkl...f 84 
                        lv+lLl  Ae + s+++ +a+ +L ++ + +s +g+p+qRl++yf +AL++r + ++ ++ ++  +++e         ++  ++a ++    
  orange1.1g043031m  49 LVHLLLLSAEKIGSQQFDRASIFLDHVDKYSSTTGNPVQRLVHYFSKALRERFNLETGRITSKGlKSEEVM--LllhpEEVMASAKQAliaC 138
                        689**************************************************995555554441444433..1344433333333334458 PP

               GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                        ++  P+++++ ++  qa+ e v++++++HiiD+    G + pa++qaLa+R++ pp  l+iT v+  ++ sk++ ee+++rLa+fAe++++p
  orange1.1g043031m 139 YQKVPFYQVTVFAGIQAVIENVSSAKKIHIIDLATRTGSHCPAIMQALATRQGCPPeLLKITMVVG-TTPSKQKFEEIENRLANFAETINLP 229
                        999*************************************************8888689****999.5569********************* PP

               GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                        f fn+         +++++++++gE++aV + ++l ++ +++ +le     +L  +++++P v+vv+e e++ n ++F +rf+ +l ++ al
  orange1.1g043031m 230 FPFNI-----SFLTDIKDFETNEGEVVAVYSPVHLSHMIRKPNCLET----FLTELRKINPCVMVVIEVESNDNLQTFEDRFFGTLFHFGAL 312
                        ****9.....234567999********************99999998....***************************************** PP

               GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                        fd+le+ + r + +r++ E+++ g++i+n++a eg+er+  h +   Wr+ ++++G+ +++ls+    qa+l+lr ++ +   +++ + ++l
  orange1.1g043031m 313 FDCLEVCMNRCHANRMTFEEMYAGQHIRNIIASEGEERIFGHMKIDGWRDLFNRFGLVEAELSSWSLFQAELILRSFAcGSSCTIDRNGECL 404
                        ******************************************************************************9999********** PP

               GRAS 359 vlgWkdrpLvsvSaWr 374
                        ++gWk+ p +s+S+W+
  orange1.1g043031m 405 IIGWKGIPHLSLSVWK 420
                        ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.73923399IPR005202Transcription factor GRAS
PfamPF035142.4E-7749420IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
LSLVDIIRAA ITRYLQFSLH GRPDLFCLDH FCGNSPTGFP EGGIKGVELV HLLLLSAEKI  60
GSQQFDRASI FLDHVDKYSS TTGNPVQRLV HYFSKALRER FNLETGRITS KGLKSEEVML  120
LLHPEEVMAS AKQALIACYQ KVPFYQVTVF AGIQAVIENV SSAKKIHIID LATRTGSHCP  180
AIMQALATRQ GCPPELLKIT MVVGTTPSKQ KFEEIENRLA NFAETINLPF PFNISFLTDI  240
KDFETNEGEV VAVYSPVHLS HMIRKPNCLE TFLTELRKIN PCVMVVIEVE SNDNLQTFED  300
RFFGTLFHFG ALFDCLEVCM NRCHANRMTF EEMYAGQHIR NIIASEGEER IFGHMKIDGW  360
RDLFNRFGLV EAELSSWSLF QAELILRSFA CGSSCTIDRN GECLIIGWKG IPHLSLSVWK  420
FHRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-31544208375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488994.20.0DELLA protein GAI-like
TrEMBLA0A067D3G50.0A0A067D3G5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006419401.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2004936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-52RGA-like 2