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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043001m | ||||||||
Common Name | CISIN_1g043001mg, LOC107175671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 122aa MW: 13849.7 Da PI: 8.6533 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.4 | 2.9e-11 | 19 | 87 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ +e l L + +e + ++ + ++W+ +s+ + + + r+++qC+ kw++l +ykki +++ orange1.1g043001m 19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRT 87 777777777777778888888888999***********************************9776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 18 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.0E-9 | 19 | 85 | No hit | No description |
PROSITE profile | PS50090 | 6.609 | 19 | 75 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEGGSSRTRH TRSQVGPDWS SKEALILGNE IAAVEADCLK ALSSYQKWKI ISETCTALDV 60 PRTANQCRRK WDSLIDEYKK IIVRSRTFPK SQTQAHTDCF PPNFDRELFK AIHDFVMSKD 120 N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2894 | 1e-174 | callus| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046692.1 | 1e-87 | uncharacterized protein LOC112101028 | ||||
TrEMBL | A0A067FMZ1 | 3e-86 | A0A067FMZ1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q300 | 3e-86 | A0A2H5Q300_CITUN; Uncharacterized protein | ||||
STRING | XP_006483638.1 | 2e-79 | (Citrus sinensis) | ||||
STRING | XP_006450086.1 | 3e-79 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12154 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 4e-37 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043001m |
Entrez Gene | 107175671 |