PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 26460.9 Da PI: 9.4346

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042627m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.9e-16	92	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Le+ F+ + +++ + + LA++l+L+ rqV vWFqNrRa+ k orange1.1g042627m 92 RKKLRLTIEQSRLLEDSFKLHTTLNSK--QALAEQLNLEPRQVEVWFQNRRARTK 144 6778899*************99865..79********************98 PP
2	HD-ZIP_I/II	108.6	4.4e-35	92	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+ eq++lLE+sF+ +++L++ K++la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lk+++++l++en+rL+ke +eL++ orange1.1g042627m 92 RKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQS 178 69********************97..679******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-15	86	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.977	88	146	IPR001356	Homeobox domain
SMART	SM00389	1.3E-12	90	150	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-14	92	144	IPR009057	Homeodomain-like
Pfam	PF00046	4.7E-13	92	144	IPR001356	Homeobox domain
CDD	cd00086	9.80E-13	92	147	No hit	No description
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
SMART	SM00340	5.4E-17	146	191	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.6E-7	146	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAAAEECNTG LCLGLGVGEH AAGRHERPKD NNNKRSAARA FLDLSFTLCP KDEDTGRMDH 60 NLSIGSGSKM SQDDGKAGVG NSNSKRINIS GRKKLRLTIE QSRLLEDSFK LHTTLNSKQA 120 LAEQLNLEPR QVEVWFQNRR ARTKLKQNEV DCEFLKKCCE SLTDENKRLK KELQELQSAK 180 AGASSPLFIQ LQKAATCPSC EKIMRTSDEG KNAAVNTDVV LKNNKWQRRF NATNEPN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	146	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453212.1	1e-164	homeobox-leucine zipper protein HAT22
Refseq	XP_015384448.1	1e-164	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	5e-50	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A067FET2	1e-174	A0A067FET2_CITSI; Uncharacterized protein
STRING	XP_006453212.1	1e-164	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23974	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-52	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g042627m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]