PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042412m | ||||||||
Common Name | CISIN_1g042412mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 75aa MW: 8520.26 Da PI: 11.0671 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 8e-17 | 17 | 60 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i + rqvt++kR++ ++KKA E+Sv C+++ +i fs+t orange1.1g042412m 17 KKIADAKARQVTYAKRKKSLIKKAREISVACGIDLVLITFSPTK 60 6799999**********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-16 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-17 | 12 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.507 | 13 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-16 | 18 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
FLLSDYNYTM GKKIEIKKIA DAKARQVTYA KRKKSLIKKA REISVACGID LVLITFSPTK 60 RGRSTKFCSM KRFK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024037061.1 | 4e-19 | probable serine/threonine-protein kinase tsuA | ||||
TrEMBL | A0A067DUU8 | 5e-45 | A0A067DUU8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006428136.1 | 5e-38 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 5e-13 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042412m |