PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042240m | ||||||||
Common Name | CISIN_1g042240mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 26112.3 Da PI: 9.4876 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ktelCr + G C++G +C+FaHg+ orange1.1g042240m 109 KTELCRSREEVGMCRFGTKCQFAHGK 134 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-14 | 106 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-5 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.98E-8 | 108 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQRVVESVYK SKMGKQKSPN GNVSPLMKYW SSSSTSSSSS SSRSALSMGP FSPVPIMSKS 60 NSGSSSSHLS AVDEEDVYVM DGLPIMRYSP SPSPSPSPSS SSSSSSSSKT ELCRSREEVG 120 MCRFGTKCQF AHGKEELRST LFPTTKNKSE VMTDSALVLT IQMEDHSMKA SVCESPVTPV 180 TFKPRLTNTA IKPEHTRKTT ALVNKDVQSR ATSTSSRDNW SPQDDGIEVT LPCHPSKTPP 240 R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015381060.1 | 1e-132 | mRNA decay activator protein ZFP36-like isoform X2 | ||||
TrEMBL | A0A067D409 | 1e-172 | A0A067D409_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006493280.1 | 1e-132 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15770 | 8 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 2e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042240m |