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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042153m | ||||||||
Common Name | CISIN_1g042153mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 28682.4 Da PI: 9.5511 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.4e-14 | 2 | 76 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +pk+f++++g e sk tl d++gr ev++ rk+++++++ GW +F k + +g vvFk++++s+f +v +f+ orange1.1g042153m 2 IPKNFVKNFG--CELSKAATLIDPNGRISEVRI--RKNGKTIWFHHGWYDFIKYYSISAGYLVVFKYVKNSTF--HVLIFD 76 9*****8887..458999***************..*********************************99999..999997 PP | |||||||
2 | B3 | 34.4 | 4e-11 | 154 | 240 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ + +++r+++p kfa+e+ ++s+++ + +e+ + +++ ++g++v+t + k+++LkegD+++F+l+++++f l++ v+ orange1.1g042153m 154 LQQSDINHHRVYVPVKFAKEFFCRDTKSIKILVSNENEKPHQINW---IQKGGFVFT--MVRIMKSKKLKEGDICIFELIRKNKFLLKLYVL 240 4667788899***********666779999******999999998...666789999..99*******************999997777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 1 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.74E-14 | 1 | 76 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.69E-20 | 1 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-5 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 2 | 76 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-12 | 143 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-13 | 146 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.11E-10 | 148 | 241 | No hit | No description |
SMART | SM01019 | 6.2E-5 | 150 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-9 | 152 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
RIPKNFVKNF GCELSKAATL IDPNGRISEV RIRKNGKTIW FHHGWYDFIK YYSISAGYLV 60 VFKYVKNSTF HVLIFDMTAC EINYPSKSEE SKNEEFVEKE EPYEDNECDL QDFLEEMGIC 120 IARKHRIVTT EQSKRAVKFV ESLELKNPSF MVILQQSDIN HHRVYVPVKF AKEFFCRDTK 180 SIKILVSNEN EKPHQINWIQ KGGFVFTMVR IMKSKKLKEG DICIFELIRK NKFLLKLYVL 240 KGK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423118.2 | 1e-72 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_015388396.1 | 4e-74 | uncharacterized protein LOC107178107 | ||||
TrEMBL | A0A067ELU7 | 1e-179 | A0A067ELU7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006485077.1 | 2e-71 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042153m |