PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042026m | ||||||||
Common Name | CISIN_1g042026mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 37131.8 Da PI: 8.4838 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.6 | 2.7e-07 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H orange1.1g042026m 190 HYCQVCGKGFKRDANLRMHMRAH 212 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 273 | 296 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + orange1.1g042026m 273 YVCKRCNrKQFSVLSDLRTHEKHC 296 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 188 | 215 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 190 | 217 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-6 | 190 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0034 | 190 | 212 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0019 | 191 | 210 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 192 | 212 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 22 | 273 | 295 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MSQAVVSSSG PASNPSNVSS LLYSVSFLKQ KVHQLQSVIT ILVSQDHHQP TESTSIALAN 60 MRSLVQEIIL TASSLMVTCQ QMSPPPASTS GTNNITTNEI SQLDPNNNQE ISSGLQGCYN 120 FSEAFDTWYG DHNDFVTTDD DNNRGMHSNN VSNYINNANI PVAENGESFS EINGDIIEVD 180 AVDLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSA ALTNPLKKNG SSMGKTMSLQ 240 SKLWNKKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDSK 300 WQCSCGTTFS RKDKLMGHVA LFVGHTPAVN VNSTN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487997.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X1 | ||||
Swissprot | Q0WT24 | 4e-98 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A067F2H0 | 0.0 | A0A067F2H0_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006487997.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 5e-99 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042026m |