PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042014m
Common NameCISIN_1g042014mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 170aa    MW: 19492.9 Da    PI: 6.1472
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042014mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.2e-1569116552
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                        +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ 
  orange1.1g042014m  69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHV 116
                        689***************************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.109.1E-63083IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003385.4E-1565129IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2267117IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-1469117No hitNo description
PfamPF001706.9E-1369115IPR004827Basic-leucine zipper domain
CDDcd147021.21E-1870117No hitNo description
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-1384142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQPFSEVSGL HYLLAPSLSQ FLNPILNFHQ IPPQVPEIIN SQTSSFSSNN STSDEAEEQQ  60
QQSMIINERK QRRMISNRES ARRSRMRKQK HLDELWSQVV WLRNENHQLV DKLNHVSGCH  120
DKVIQENAEL KVEATELRQM LTDLQLNSHY SSLKDLDDVP CCNAADLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482346.11e-106basic leucine zipper 43
SwissprotQ9FMC22e-44BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A067GA701e-121A0A067GA70_CITSI; Uncharacterized protein
STRINGXP_006482346.11e-105(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]