PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041015m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23026.3 Da PI: 7.6964 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 60 | 110 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a+++++g+ orange1.1g041015m 60 TYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGSFPTAEMAARAHDVAALAIKGH 110 69****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-32 | 60 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-12 | 60 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 60 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.02E-32 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.6E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDTDEKNSSS YSPSSTPTSK KSSKSQQANK ELMSPTIDNE NESNKKICNN GANALNKYPT 60 YRGVRMRSWG KWVSEIRQPR KKSRIWLGSF PTAEMAARAH DVAALAIKGH SAHLNFPELA 120 DELPRPASAA PKDIQAAAAK AAAAAIFDSP RRIEANNDTQ STCHDENKNS ADHHDHSSSD 180 DSDSAWFDHL PDLSLEGDRK KIGANISHGA C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 61 | 117 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044118.1 | 1e-140 | ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A067EG98 | 1e-143 | A0A067EG98_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006490227.1 | 1e-139 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041015m |