PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040756m

Common Name

CISIN_1g040756mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 292aa MW: 32485.1 Da PI: 9.5178

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040756m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.6	1.6e-18	22	109	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt +e+++Liea++ ++er +++ ++ +W++v +++ ++g+ rs++qC++kw+nl ++yk++++ e+k s sss+ orange1.1g040756m 22 WTVSETMVLIEAKQMDDERRMKRSsgessesrgkPAELRWKWVEDYCCRKGCLRSQNQCNDKWDNLMRDYKRVRDYERKLLSSSSSSS 109 ***********96555555321233444444499*****************************************976666554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	14	88	IPR017877	Myb-like domain
Pfam	PF13837	3.2E-13	21	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MTDQGGDGGG GTGMREYRKG NWTVSETMVL IEAKQMDDER RMKRSSGESS ESRGKPAELR 60 WKWVEDYCCR KGCLRSQNQC NDKWDNLMRD YKRVRDYERK LLSSSSSSSP SDHGNIKAQN 120 VSYWKMEKNE RKEKNLPTNM LPQIYEALVE VVEKKGAGQR VIAGAGVGVS VASGSHPHVG 180 YMVQPIAAAA SLPPMLQQQH HQPSAPTTML QPQPLPLPPL SLQPPPPQPQ AAVPTILIRV 240 SIQTHRQRGE KEEEQKEVVG ISREPVLAPP PLQVQALLKN LEQLFPKVLP L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2351	0.0	callus\| flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024951062.1	1e-177	trihelix transcription factor ASR3 isoform X1
TrEMBL	A0A067GFI4	0.0	A0A067GFI4_CITSI; Uncharacterized protein
STRING	XP_006468473.1	1e-175	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	orange1.1g040756m