PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 376aa MW: 41411.7 Da PI: 6.2705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040726m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl orange1.1g040726m 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81 89****************************99**********97 PP
2	Myb_DNA-binding	46.4	8.9e-15	92	132	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l orange1.1g040726m 92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-22	25	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.205	29	81	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-29	31	128	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	33	83	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-16	34	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.08E-11	36	81	No hit	No description
PROSITE profile	PS51294	24.404	82	136	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-24	84	137	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	86	134	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-13	92	132	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-11	92	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MRNPSTSPSS TAAAAAAAAT NKSTPCCSKV GLKRGPWTPE EDELLANYIN KEGEGRWRTL 60 PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLSKKLISQG IDPRTHKPLN QELDPSSADQ VTNSNSKAST SKAILNSSSS 180 NPNLTPMTVS SGHLDQRHTS AGCGRMISSI MMINKENGYS PNALVDDHDS EYHQNGMMEN 240 PYTSLSNCDH HHDDDGGLGL RSNNVNNVFN EGLSYEVDVD INYCNDDVFS SFLNSLINED 300 AFASQHNQQV LQQQQQQHLS NETIALPNTI TGSSSDPLVS TAAASTFGLE ANWESPIMAS 360 SLNQDESRRV DEHVE*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MRNPSTSPSS TAAAAAAAAT NKSTPCCSKV GLKRGPWTPE EDELLANYIN KEGEGRWRTL  60
PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLSKKLISQG IDPRTHKPLN QELDPSSADQ VTNSNSKAST SKAILNSSSS  180
NPNLTPMTVS SGHLDQRHTS AGCGRMISSI MMINKENGYS PNALVDDHDS EYHQNGMMEN  240
PYTSLSNCDH HHDDDGGLGL RSNNVNNVFN EGLSYEVDVD INYCNDDVFS SFLNSLINED  300
AFASQHNQQV LQQQQQQHLS NETIALPNTI TGSSSDPLVS TAAASTFGLE ANWESPIMAS  360
SLNQDESRRV DEHVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-25	32	136	2	105	C-Myb DNA-Binding Domain
1msf_C	5e-25	32	136	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488922.1	0.0	transcription factor MYB34
Swissprot	Q38850	2e-82	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A067ET79	0.0	A0A067ET79_CITSI; R2R3-MYB family transcription factor
TrEMBL	A0A2H5PYU1	0.0	A0A2H5PYU1_CITUN; Uncharacterized protein
TrEMBL	A0A411PZY6	0.0	A0A411PZY6_CITMA; R2R3-MYB family transcription factor
STRING	XP_006488922.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-83	myb domain protein 5

Link Out ? help Back to Top
Phytozome	orange1.1g040726m
Entrez Gene	102618087

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]