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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g040161m |
Common Name | CISIN_1g040161mg, LOC102612105 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
Dof |
Protein Properties |
Length: 367aa MW: 39163.4 Da PI: 9.1537 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g040161m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 123.5 | 7e-39 | 85 | 144 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ss
orange1.1g040161m 85 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSS 144
68899****************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MIQELLGAAG FISGDRKISI TGSIFEGTTS PLPPCTTTTT ATVTTTTATA APPPPPPPLP 60 TTTTSNTDSN IGNNTNNTSS NSGNNQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR 120 YWTKGGALRN VPIGGGCRKN KSSSTVTAAS FGKSSSSSSA ANKMKTVAYE IGRGGFVHHP 180 HEYYSSTPIM WNNSPHNSQL LALLRTSQNP NINPTGPSTS TSSVRVKEEQ GVIGTHHVIK 240 GEPVGDTAAV LNSGTMVFNP LSQQLQVPSQ LGLWKNNQHQ IQAPQQNGFL VGHEVQNSGV 300 QELYQRFKSS TNNYYADHLA SPVVLSNAAS STTTILESAP VAGGELGYWN PVFSWSDLST 360 TNGSYP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF144749 | 3e-46 | EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA. |