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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g039886m |
| Common Name | CISIN_1g039886mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 192aa MW: 22276.7 Da PI: 8.0518 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g039886m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 96.8 | 3.4e-30 | 7 | 81 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++eke yfF++rd+ky++g+r+nra+ +gyWkatg dk++++ +g++vg kktLvfy+g+ pkg kt W+mheyr+
orange1.1g039886m 7 EKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKH-NGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRV 81
568899************************************.999****************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MYKGCAEKEK EFYFFTPRDR KYKNGTRPNR AAGEGYWKAT GADKSIKHNG AVVGFKKTLV 60
FYEGKPPKGD KTFWIMHEYR VNNDSPPSTR TRLSTDMRLD DWVLCRIYYK ERSDKSLKSL 120
HRTEDRASTE ETNEPDCDKG SAVDFSGYAD TYSGYMQHLW QQQNAFSQIP SFKDVSFDSI 180
VNLDEPFQHD GT
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-39 | 9 | 113 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-39 | 9 | 113 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-39 | 9 | 113 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-39 | 9 | 113 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-39 | 9 | 113 | 70 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-39 | 9 | 113 | 70 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
