PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039602m

Common Name

CISIN_1g039602mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 2133aa MW: 234327 Da PI: 8.6531

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039602m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.7e-06	1998	2019	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C G++C+ +H++ orange1.1g039602m 1998 CPTFKATGSCALGAKCRLHHPK 2019 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.057	1888	1916	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.507	1888	1917	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.6	1917	1941	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.718	1921	1942	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0025	1943	1968	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.22	1943	1969	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.066	1970	1997	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	1970	1996	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4	1997	2019	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.005	1998	2020	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2133 aa Download sequence Send to blast
SKVKGRSGNT KPTTKKRATN ESRILISKNE KQEEEEPPRP VMSHGFSVRS SIKFQFSPNF 60 SPNPKPQNQY HHQRSNDFAH RISINDDRLQ QHQQTDRRHH HHRQHPVADF EARQDVWDRH 120 PRIQPDHRPV VSRLDRHHEF DHRPLSPYRS MDKIKHELDT TSYRFRERYS NDVVQFEHTG 180 SNNSNQRVDF VSHRSQFVST SDRLNSSNYD NQHGSQFDSN ELMSNNVRDV GLNRPVFKER 240 ESRDSLLGRG SNSENSGDGV RAFSGKREFY ASDAGRYGNN RGSREHSYEY NRTPRKQVQK 300 KSALLRIQKP YYRNRDDGEL HHSNYEIKSG SFRGKDQVVF SDRDVGEHEQ REGSPVELDV 360 SFKSNSLVAK AIVATSSSAI VSDANLTPKK GNTRKIVMSN KDHSSLQMNK PLDSSRKLGG 420 SRDAVNNALV SEDKDSKQAE KKVAPSCANK CDTNSNPCSS GSNTSPAKIT VEKLKSIVPE 480 KCGTTKTSAL KVAKKKKVAK RVVKKAINPT VHVSGSQPTE KLDELLKADA STLGAPAASV 540 LKMGVKPSKD KISSAAMASG HLDDLQAYTY EANMSPGTEQ VGGSPETAMV SKEVSTDGDS 600 CAPCVTKIKR KRSGSISRLA CSSHKETKID EGSVNADGCL HVLNTASNFD KDLTKLLNET 660 NFSDIGGLEG ADKHFCHNGH SLLHENSETK EYSEPLLREG RNINSDLKSL EEIRRHEVHV 720 NTCSSAHGMN TTTSCNIGLL SSQEKMTDSE VGILNASSKQ PCKGQMSSSV NSSTVEGCPS 780 VMLPGRCEIS AFSSSEETDF HNASTHVDHS NGDKGSCSGS DRVIINSEEI NPGTGDYNGR 840 QLATNEVTIA IEGGHAGGLA NTMFSVGSRE FGMSNNTDKC KVMTSVSDFP DAMVSDMDTG 900 PVKAFSSVQS LNTALSVKDS FPVEVRVTEG LDVGLQSSSD GLSVFRGHNS TGGCSEANVS 960 ESSGLNGSSP ENRKRRKVSA NHPGFTSEIV PQISEGPVTP DLSTSGVELP SNSTEGQMHP 1020 EEGVAVSNMD TLCDSSLPPC PDGITVLLDS GSAQISSEVA VSVHTNASGF GDDSLKVEPC 1080 IVEPSLAFGE SDNANVRTTC PPGSEGKQIV NEDPVVDGTN YNNEDMCTEK SKMENIEAFV 1140 VEEQVKACNV TTEFVTPEHQ SSDLNKILPA TDVESDCCLL ERGDLSRAYR ALVADGDGVS 1200 TTNSYDEMME FDSISELGSP EILSTVPVMN ALNHEASASQ ISNEKVCRIE KIPSEEPVDE 1260 GFFNLSAHTS PSEHAKINLK LDDMLESAHL VAQRTVSLPA QDVKDTGLTL NPMSGETNGK 1320 KHQASHCVSR IHPRRSSSVF TASRDLASST RTTCTTRPRT WHRTESSSAS PAPGNKSLLP 1380 PQNQLPKKVA KYQSMSYIRK GNSLVRKPAP VAAVSQISHG LTSSVYWLNS SGIGESKKTR 1440 GSEGGADVVD PPSFLRGVNA PLERPRTPPL PVVAKVPNHA TSSTGDYTSS PVAEPLPNGC 1500 SETKSDTQKL MEINDELNFS NAALNISKTP VNQTGSVNGL ESQGELNDGT LCTSNVKRIT 1560 YLKRKSNQLI AASNGCSLSV QNPDKTQSTA SDGYYKRRKN QLIRTPLESH INQTVSLADG 1620 SFTSEGEKCA KDIFRRSDMS QSYKAVKKIC KPIRFSLVWT LNSMQSSKSD DHFLYRGKVL 1680 PSLFPWKRTL YWRRFVQDPV SISNNSSLSA ISRKLLLLRK RDTVYTRSNH GFSLRKYKVL 1740 SVGGSSLKWS KSIENRSKKV NEEATLAVAA VEKKRQENGA ESFASETKIR IRSCRERIFR 1800 IGSVRYKMDS SRRTLQRISD DSSPCAAGPT LEKNAKKSYI PRRLVIGNDE YVRIGNGNQL 1860 IRDPKRRARV LASEKVRWSL HTARLRLARK RKYCQFFTRF GKCNKDNGKC PYIHDPSKIA 1920 VCTKFLKGLC SNSDCKLTHK VIPERMPDCS YFLQGLCTNK NCPYRHVHVN PNASTCEGFL 1980 KGYCADGDEC RKKHSYVCPT FKATGSCALG AKCRLHHPKS RSNGKKSRRS RKPKNTHGRY 2040 FGSMLVEDSE SQTAMSERPT VQNNGNLFVE GKLVDYIGLD VSDKEAGETN DALHELLDFN 2100 DSGASELQLD DLDELIKPIR IMNSHPSSYS TG*

Sequence ? help Back to Top

Protein Sequence Length: 2133 aa Download sequence Send to blast

SKVKGRSGNT KPTTKKRATN ESRILISKNE KQEEEEPPRP VMSHGFSVRS SIKFQFSPNF  60
SPNPKPQNQY HHQRSNDFAH RISINDDRLQ QHQQTDRRHH HHRQHPVADF EARQDVWDRH  120
PRIQPDHRPV VSRLDRHHEF DHRPLSPYRS MDKIKHELDT TSYRFRERYS NDVVQFEHTG  180
SNNSNQRVDF VSHRSQFVST SDRLNSSNYD NQHGSQFDSN ELMSNNVRDV GLNRPVFKER  240
ESRDSLLGRG SNSENSGDGV RAFSGKREFY ASDAGRYGNN RGSREHSYEY NRTPRKQVQK  300
KSALLRIQKP YYRNRDDGEL HHSNYEIKSG SFRGKDQVVF SDRDVGEHEQ REGSPVELDV  360
SFKSNSLVAK AIVATSSSAI VSDANLTPKK GNTRKIVMSN KDHSSLQMNK PLDSSRKLGG  420
SRDAVNNALV SEDKDSKQAE KKVAPSCANK CDTNSNPCSS GSNTSPAKIT VEKLKSIVPE  480
KCGTTKTSAL KVAKKKKVAK RVVKKAINPT VHVSGSQPTE KLDELLKADA STLGAPAASV  540
LKMGVKPSKD KISSAAMASG HLDDLQAYTY EANMSPGTEQ VGGSPETAMV SKEVSTDGDS  600
CAPCVTKIKR KRSGSISRLA CSSHKETKID EGSVNADGCL HVLNTASNFD KDLTKLLNET  660
NFSDIGGLEG ADKHFCHNGH SLLHENSETK EYSEPLLREG RNINSDLKSL EEIRRHEVHV  720
NTCSSAHGMN TTTSCNIGLL SSQEKMTDSE VGILNASSKQ PCKGQMSSSV NSSTVEGCPS  780
VMLPGRCEIS AFSSSEETDF HNASTHVDHS NGDKGSCSGS DRVIINSEEI NPGTGDYNGR  840
QLATNEVTIA IEGGHAGGLA NTMFSVGSRE FGMSNNTDKC KVMTSVSDFP DAMVSDMDTG  900
PVKAFSSVQS LNTALSVKDS FPVEVRVTEG LDVGLQSSSD GLSVFRGHNS TGGCSEANVS  960
ESSGLNGSSP ENRKRRKVSA NHPGFTSEIV PQISEGPVTP DLSTSGVELP SNSTEGQMHP  1020
EEGVAVSNMD TLCDSSLPPC PDGITVLLDS GSAQISSEVA VSVHTNASGF GDDSLKVEPC  1080
IVEPSLAFGE SDNANVRTTC PPGSEGKQIV NEDPVVDGTN YNNEDMCTEK SKMENIEAFV  1140
VEEQVKACNV TTEFVTPEHQ SSDLNKILPA TDVESDCCLL ERGDLSRAYR ALVADGDGVS  1200
TTNSYDEMME FDSISELGSP EILSTVPVMN ALNHEASASQ ISNEKVCRIE KIPSEEPVDE  1260
GFFNLSAHTS PSEHAKINLK LDDMLESAHL VAQRTVSLPA QDVKDTGLTL NPMSGETNGK  1320
KHQASHCVSR IHPRRSSSVF TASRDLASST RTTCTTRPRT WHRTESSSAS PAPGNKSLLP  1380
PQNQLPKKVA KYQSMSYIRK GNSLVRKPAP VAAVSQISHG LTSSVYWLNS SGIGESKKTR  1440
GSEGGADVVD PPSFLRGVNA PLERPRTPPL PVVAKVPNHA TSSTGDYTSS PVAEPLPNGC  1500
SETKSDTQKL MEINDELNFS NAALNISKTP VNQTGSVNGL ESQGELNDGT LCTSNVKRIT  1560
YLKRKSNQLI AASNGCSLSV QNPDKTQSTA SDGYYKRRKN QLIRTPLESH INQTVSLADG  1620
SFTSEGEKCA KDIFRRSDMS QSYKAVKKIC KPIRFSLVWT LNSMQSSKSD DHFLYRGKVL  1680
PSLFPWKRTL YWRRFVQDPV SISNNSSLSA ISRKLLLLRK RDTVYTRSNH GFSLRKYKVL  1740
SVGGSSLKWS KSIENRSKKV NEEATLAVAA VEKKRQENGA ESFASETKIR IRSCRERIFR  1800
IGSVRYKMDS SRRTLQRISD DSSPCAAGPT LEKNAKKSYI PRRLVIGNDE YVRIGNGNQL  1860
IRDPKRRARV LASEKVRWSL HTARLRLARK RKYCQFFTRF GKCNKDNGKC PYIHDPSKIA  1920
VCTKFLKGLC SNSDCKLTHK VIPERMPDCS YFLQGLCTNK NCPYRHVHVN PNASTCEGFL  1980
KGYCADGDEC RKKHSYVCPT FKATGSCALG AKCRLHHPKS RSNGKKSRRS RKPKNTHGRY  2040
FGSMLVEDSE SQTAMSERPT VQNNGNLFVE GKLVDYIGLD VSDKEAGETN DALHELLDFN  2100
DSGASELQLD DLDELIKPIR IMNSHPSSYS TG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	1e-18	1894	2019	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	1e-18	1894	2019	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434296.1	0.0	uncharacterized protein LOC18042948
TrEMBL	A0A067GYA9	0.0	A0A067GYA9_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006434296.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12

Link Out ? help Back to Top
Phytozome	orange1.1g039602m