PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 345aa MW: 38752.3 Da PI: 4.992

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039560m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s orange1.1g039560m 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	26.4	2.9e-10	123	191	11	79
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+lqqe+ +L++++++ + ++R + + L s+k++++ e++L + l+++ ++K+ ll ++++ orange1.1g039560m 123 NNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 191 67889**********************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.955	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.15E-36	2	75	No hit	No description
SuperFamily	SSF55455	8.24E-30	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.2E-6	125	199	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA 120 AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR 180 KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT 240 MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAFVS AGLHSAPLSP SLYPQIQQHG 300 MMGTDTNEIL PRDQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA  120
AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR  180
KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT  240
MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAFVS AGLHSAPLSP SLYPQIQQHG  300
MMGTDTNEIL PRDQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-16	1	84	1	85	MEF2 CHIMERA
6bz1_B	1e-16	1	84	1	85	MEF2 CHIMERA
6bz1_C	1e-16	1	84	1	85	MEF2 CHIMERA
6bz1_D	1e-16	1	84	1	85	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040406.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-142	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A067GQC2	0.0	A0A067GQC2_CITSI; Uncharacterized protein
STRING	XP_006473013.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-130	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	orange1.1g039560m

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]