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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g039560m |
Common Name | CISIN_1g039560mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
MIKC_MADS |
Protein Properties |
Length: 345aa MW: 38752.3 Da PI: 4.992 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g039560m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.9 | 5.6e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s
orange1.1g039560m 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
79********************************************9997 PP
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2 | K-box | 26.4 | 2.9e-10 | 123 | 191 | 11 | 79 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79
+++ e+lqqe+ +L++++++ + ++R + + L s+k++++ e++L + l+++ ++K+ ll ++++
orange1.1g039560m 123 NNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 191
67889**********************************************************999875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010152 | Biological Process | pollen maturation |
GO:0080092 | Biological Process | regulation of pollen tube growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA 120 AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR 180 KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT 240 MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAFVS AGLHSAPLSP SLYPQIQQHG 300 MMGTDTNEIL PRDQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |