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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039420m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 285aa MW: 32477.6 Da PI: 9.9593 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.2 | 2.2e-25 | 155 | 204 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+ledl kyF+lpi +A+ L+v+lTvLK++CR++GI+RWPhRkiksl orange1.1g039420m 155 AKIDLEDLVKYFDLPILEASTRLNVGLTVLKKKCREFGIPRWPHRKIKSL 204 689*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.246 | 139 | 224 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.4E-21 | 157 | 204 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
RGSYVEMQAT PILKLRGFQV SELFQGRAIG LWLCIFAFGA QSSLAFVDIP PKLLISRNPK 60 LKSIPKLAND LQMIFQLSCG TENQELLQST LKEMCEMSRS HCYRSRRTPQ VFHQDLNCVP 120 YSVSTCEYSG SQQIEQCGPG TMDKKKKRAT SEDVAKIDLE DLVKYFDLPI LEASTRLNVG 180 LTVLKKKCRE FGIPRWPHRK IKSLDGLIHE LQEVDHQQPG GEAVGTAVAK RRQMLEEEKE 240 TIGRRPFVEI QRETKKFRQD IFKRRHKAKA LKIQTSQSPS SQQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX064678 | 0.0 | KX064678.1 Citrus trifoliata clone 1 RWP-RK domain containing protein (RKD5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425291.2 | 0.0 | protein RKD5 | ||||
Refseq | XP_006467075.1 | 0.0 | protein RKD5 isoform X1 | ||||
Swissprot | O81791 | 2e-71 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | V4SN59 | 0.0 | V4SN59_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006467075.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006425291.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 7e-74 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039420m |
Publications ? help Back to Top | |||
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