PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039386m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 583aa    MW: 64510.3 Da    PI: 8.5666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039386mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15331416183
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+ +++
  orange1.1g039386m 331 FEKILSASDAGRIGRLVLPKACAEAYfpHISQSEGVPLRVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTSMIH 416
                        99**************************777778999***************9989999999***9.***************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-25327443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-16328412IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-20329442No hitNo description
SMARTSM010191.3E-14331431IPR003340B3 DNA binding domain
PfamPF023622.3E-12331418IPR003340B3 DNA binding domain
PROSITE profilePS508638.854331444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC  60
NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT  120
QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE  180
VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS  240
NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK  300
NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI  360
SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLRAG DTSMIHSILT  420
RDDKITFSRI DPGGKLVMGF RKAPIPGDMQ DAQTSAITNG CPGESFLSGV TENLPTVSGY  480
SGHFQMLKGS KDPHIDALSE HLSLAEGGNG WHKSENHGQK TNEDSPQKSL LGMEKKRTRN  540
IGSKSKRLLM HSEEAMELRL TWEEAQDLLR PSPSARTKHC HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-693094502131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432020.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_006491930.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A2H5Q0K70.0A0A2H5Q0K7_CITUN; Uncharacterized protein
STRINGXP_006491930.10.0(Citrus sinensis)
STRINGXP_006432020.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-163high-level expression of sugar-inducible gene 2