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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g039198m |
| Common Name | CISIN_1g039198mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB |
| Protein Properties |
Length: 352aa MW: 39148.8 Da PI: 6.4221 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g039198m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+d+++++G g+W++ ++ g++R++k+c++rw +yl
orange1.1g039198m 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
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| 2 | Myb_DNA-binding | 56.8 | 5.3e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++l+v++++ lG++ W++Ia +++ gRt++++k++w+++l
orange1.1g039198m 68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLP-GRTDNEIKNFWNTHL 113
89********************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MESLQISDEI NNIKKGPWTP EEDQKLIDYI RKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60
YLRPDIKRGK FSEEEEQLIV NLHAVLGNKW SAIATRLPGR TDNEIKNFWN THLKKKLLQM 120
GIDPVTHRPR TDLNNVLANL PQLLAAANFA VGNLMNVPNS WDINALKLQS DATQLAKIQL 180
LHNIIQILST SPPPNIEASS LLGSSLGDNY NQLFEFLRMN SHQFHGNNGN GNGNVPFGFT 240
PQEPNQILSN LLNFDSASQL PHLGDYTNTS TSNTSQLGSS SYANNIPTSN QLPALVSVSS 300
ADCSALNQQI ETKINPNDIS NPSSTLTTFE ANWGDFMDDE ASQSYWRDFI E*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
