PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039114m

Common Name

CISIN_1g039114mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 633aa MW: 71887.8 Da PI: 6.6114

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039114m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.5	2e-109	255	625	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+a +s+d++ a +l +++++++spdgd +qRla+yf+++L+arl+++ + ++ s+ts ++++l+a+ ++ +sP+ k orange1.1g039114m 255 SSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTS---VADVLKAYIVYISASPFRKA 343 689*************************************************777777666666666...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 s++++N++I + +e++++vHiiDf+is+G+QWp+++q + Rp+gpp++RiTg++ pe+g +e++eetg+rL+k Ae+++vpfe+++ +a orange1.1g039114m 344 SNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGfrPAERVEETGHRLKKAAERCNVPFEYSA-IA 434 *******************************************************9**************************.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +++e+++l++L+++++E+++V ++++l +l+d+++ +s rd+vL+l+k+++P+++v+ + +ns+ F+ rf ea+ ++salfd+lea++ orange1.1g039114m 435 QKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATV 526 ****************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 p+e++ r +Ere++gr+++nv+aceg er+ + et+++W++r +aGF+++p++++ +k ++++ + + + v+e+ +++++gWk++ L orange1.1g039114m 527 PTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKIL 618 ******************************************************************888*************** PP GRAS 368 vsvSaWr 374 +++S+W+ orange1.1g039114m 619 YALSFWK 625 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.241	228	605	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-107	255	625	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MNGFEFGRGS IRACSNHESD HSAMNEFMDH PTDHHLSINS APSLASSSDG ASRYNFENVN 60 FSYAVFKYIN DILMEEDVAS NTCMLQDCLA LQATEKSFYD VLGQQYPPSP NQYSHCFNPN 120 GNSPDDDIDS SSSIDNNNSC DATNNASDEE VRHYSLKGSR GRKIHQIDDR DFLDEGRSNK 180 QLVPLLEEAV RCDMFVEVMI PKGGSYDSVQ CPLFEAARNR AARNLPCDKT KIKGSNSRIL 240 RMMRQDNTSE VVDLSSLLTQ CAQAAASNDQ RVAIELSKQI RQHSSPDGDG TQRLAHYFAN 300 GLEARLSGTR TPYFSPAFIS KTSVADVLKA YIVYISASPF RKASNFLTNR MIGKTTEKAT 360 KVHIIDFGIS YGFQWPCFIQ RQSFRPGGPP KIRITGIELP EPGFRPAERV EETGHRLKKA 420 AERCNVPFEY SAIAQKWETI KLDDLKIDRD EVTVVTCMYR LNYLPDDTQV KDSLRDAVLR 480 LIKRINPDLF VHGVANGTYN SPFFVSRFKE AMFHFSALFD MLEATVPTED QGRLIYEREV 540 FGRHAMNVLA CEGLERIDNP ETYRQWQSRN LRAGFRQLPV DQELLRRVKK MVKMDYHKDF 600 DVDENGQWML QGWKGKILYA LSFWKPVQDS QN*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MNGFEFGRGS IRACSNHESD HSAMNEFMDH PTDHHLSINS APSLASSSDG ASRYNFENVN  60
FSYAVFKYIN DILMEEDVAS NTCMLQDCLA LQATEKSFYD VLGQQYPPSP NQYSHCFNPN  120
GNSPDDDIDS SSSIDNNNSC DATNNASDEE VRHYSLKGSR GRKIHQIDDR DFLDEGRSNK  180
QLVPLLEEAV RCDMFVEVMI PKGGSYDSVQ CPLFEAARNR AARNLPCDKT KIKGSNSRIL  240
RMMRQDNTSE VVDLSSLLTQ CAQAAASNDQ RVAIELSKQI RQHSSPDGDG TQRLAHYFAN  300
GLEARLSGTR TPYFSPAFIS KTSVADVLKA YIVYISASPF RKASNFLTNR MIGKTTEKAT  360
KVHIIDFGIS YGFQWPCFIQ RQSFRPGGPP KIRITGIELP EPGFRPAERV EETGHRLKKA  420
AERCNVPFEY SAIAQKWETI KLDDLKIDRD EVTVVTCMYR LNYLPDDTQV KDSLRDAVLR  480
LIKRINPDLF VHGVANGTYN SPFFVSRFKE AMFHFSALFD MLEATVPTED QGRLIYEREV  540
FGRHAMNVLA CEGLERIDNP ETYRQWQSRN LRAGFRQLPV DQELLRRVKK MVKMDYHKDF  600
DVDENGQWML QGWKGKILYA LSFWKPVQDS QN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-43	244	626	9	380	Protein SCARECROW
5b3h_A	2e-43	244	626	8	379	Protein SCARECROW
5b3h_D	2e-43	244	626	8	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488667.1	0.0	scarecrow-like protein 9
Refseq	XP_024035700.1	0.0	scarecrow-like protein 9
TrEMBL	A0A067G375	0.0	A0A067G375_CITSI; Uncharacterized protein
STRING	XP_006488667.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-166	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	orange1.1g039114m