PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038974m
Common NameCISIN_1g038974mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 135aa    MW: 15492.7 Da    PI: 7.5306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038974mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.71.9e-2221201124
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppG+ F+Pt+e+ v  yL  kv+g++    +  i++++++++ePw+L + +++  ++++yf + r ++y++ +   r +  g+Wk+ g + 
  orange1.1g038974m   2 LPPGVVFNPTEEDRV-SYLIGKVSGHTDGGGSYfIQDIQLCEHEPWELLSlAHDCCHQQMYFTHLR-SRYHS-EMVYREAVCGFWKNLGLSS 90 
                        79*************.9*********96665555**************741333344555655555.55654.567777788********** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmh 124
                         + +k+g+ v +kk+L +y    +k +kt+W+m 
  orange1.1g038974m  91 YINDKGGKPVAVKKSLNYY----KKDVKTQWLMT 120
                        *******************....45679*****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6592134IPR003441NAC domain
SuperFamilySSF1019418.24E-182120IPR003441NAC domain
PfamPF023656.9E-113120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MLPPGVVFNP TEEDRVSYLI GKVSGHTDGG GSYFIQDIQL CEHEPWELLS LAHDCCHQQM  60
YFTHLRSRYH SEMVYREAVC GFWKNLGLSS YINDKGGKPV AVKKSLNYYK KDVKTQWLMT  120
CTHFCTITSI RHEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067D0I68e-98A0A067D0I6_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2960222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-13NAC family protein