PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 76aa MW: 8754.06 Da PI: 10.3463

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038783m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.9	1.1e-32	25	75	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++ orange1.1g038783m 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75 79***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-41	17	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.543	17	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-30	18	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.07E-39	18	76	No hit	No description
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-28	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MEFPKQNPES SSQSKKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_A	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	1e-21	17	76	1	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2580	1e-127	flower\| fruit\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in stamens and carpels.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218613	1e-122	AB218613.1 Citrus unshiu CitMADS6 mRNA for MADS-box protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437205.2	2e-48	agamous-like MADS-box protein AGL5 isoform X2
Refseq	XP_024956880.1	2e-48	agamous-like MADS-box protein AGL5
Swissprot	Q40885	2e-38	AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBL	A0A067F470	2e-48	A0A067F470_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5PEJ0	1e-46	A0A2H5PEJ0_CITUN; Uncharacterized protein
TrEMBL	A0A2P0ZW21	7e-47	A0A2P0ZW21_CITSI; MADS6 protein
TrEMBL	Q05KK0	7e-47	Q05KK0_CITUN; MADS-box protein
TrEMBL	V4TKW4	3e-48	V4TKW4_9ROSI; Uncharacterized protein
STRING	XP_006484831.1	1e-47	(Citrus sinensis)
STRING	XP_006437206.1	4e-49	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	7e-30	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038783m

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434]