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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038709m | ||||||||
Common Name | CISIN_1g038709mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 68aa MW: 7992.2 Da PI: 10.5818 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.6 | 1.7e-14 | 20 | 60 | 1 | 45 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 s+y GVr+++ +gr++AeIr p++ + r++lg+f+ aeeAa a orange1.1g038709m 20 SRYLGVRRRP-WGRYAAEIRNPRT---KERHWLGTFDAAEEAAIA 60 7899******.**********954...4***************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-14 | 20 | 63 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.32E-17 | 20 | 60 | No hit | No description |
Pfam | PF00847 | 2.4E-8 | 20 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-9 | 21 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-19 | 21 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.265 | 21 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MEKFPELLYG NPKRSSRQSS RYLGVRRRPW GRYAAEIRNP RTKERHWLGT FDAAEEAAIA 60 VYMMILY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446878.1 | 1e-32 | ethylene-responsive transcription factor LEP | ||||
Swissprot | Q3E703 | 6e-22 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A067DCP2 | 7e-42 | A0A067DCP2_CITSI; Uncharacterized protein | ||||
STRING | POPTR_0019s11780.1 | 1e-31 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 3e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038709m |