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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g038669m |
| Common Name | CISIN_1g038669mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C2H2 |
| Protein Properties |
Length: 245aa MW: 26027.9 Da PI: 8.2385 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g038669m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00023 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k Fs+ L H +H
orange1.1g038669m 98 FKCSVCDKAFSSYQALGGHKASH 120
89**********99999998887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0009409 | Biological Process | response to cold |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009611 | Biological Process | response to wounding |
| GO:0009644 | Biological Process | response to high light intensity |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0010117 | Biological Process | photoprotection |
| GO:0010200 | Biological Process | response to chitin |
| GO:0015979 | Biological Process | photosynthesis |
| GO:0035264 | Biological Process | multicellular organism growth |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MALEALNSPT TSTPPFHFEE ANLHCLEPWT KRKRSKRPHN PPTEEEYLAL CLVMLARGTT 60
STAALTNCNT TTTASQRQKS PAPSTAATTS SSDQKLVFKC SVCDKAFSSY QALGGHKASH 120
RKGSGGGDEH SASTTTNTNA TATTTGVPNA TGRTHECSIC HKSFPTGQAL GGHKRCHYDG 180
GEKSGVTSSG SSSTHSQVSH RDFDLNLPVL PELSPAFFFS GDDEVESPLP AKKPRLFLPP 240
KIEV*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Csi.4483 | 0.0 | callus| flower| fruit| leaf| root| vegetative meristem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC820894 | 0.0 | KC820894.1 Citrus trifoliata Cys2/His2-type zinc finger protein (PtrZPT2-1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
[PMID:24275141] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Shi H,Chan Z
The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
J. Pineal Res., 2014. 57(2): p. 185-91
[PMID:24962049] - Munekage YN,Inoue S,Yoneda Y,Yokota A
Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(6): p. 1116-26
[PMID:25293694] - van Buer J,Cvetkovic J,Baier M
Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
BMC Plant Biol., 2016. 16(1): p. 163
[PMID:27439459] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Nguyen HM, et al.
Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
Front Plant Sci, 2017. 8: p. 1001
[PMID:28717360] - Geilen K,Heilmann M,Hillmer S,Böhmer M
WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
Sci Rep, 2017. 7(1): p. 14235
[PMID:29079824] - Liu X, et al.
Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
Mol Plant, 2017. 10(12): p. 1510-1522
[PMID:29107034] - Huang K, et al.
Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
[PMID:29196259]
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