PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038601m | ||||||||
Common Name | CISIN_1g038601mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 21793.7 Da PI: 10.6067 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG g+W+ I++ + ++Rt+ q+ s+ qky orange1.1g038601m 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.73 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.8E-4 | 3 | 31 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.069 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-18 | 117 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-19 | 118 | 170 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-10 | 119 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-12 | 119 | 166 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-9 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGRKCSHCGN TGHNSRTCSS YDNNLKGGSC STSTLAGGLR LFGVQLAISS NSSSSSSSQL 60 LPLKKSLSTD SFPAIPSPSS SASSSSSTGV TINIDQHSNK LSNGYISDSL IAPTQDRKKG 120 VPWTEEEHRV FLMGLEKLGR GDWRGISKNF VTTRTPTQVA SHAQKYFLRQ KNLYKRKRRP 180 SLFDVMPWAW FLLVLLGLY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450815.1 | 1e-132 | transcription factor MYBS3 | ||||
TrEMBL | A0A067GX64 | 1e-143 | A0A067GX64_CITSI; Uncharacterized protein | ||||
STRING | XP_006450815.1 | 1e-131 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 8e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038601m |