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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038569m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 363aa MW: 40642.4 Da PI: 4.2866 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 305 | 339 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp+++++ LA+++gL++rq+ +WF N+R ++ orange1.1g038569m 305 NWPYPTEADKVALAESTGLDQRQINNWFINQRKRH 339 669*****************************885 PP | |||||||
2 | ELK | 27.5 | 7e-10 | 259 | 280 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 E K+ L rKY+gy+++Lk+EFs orange1.1g038569m 259 ETKDNLIRKYGGYISTLKHEFS 280 7899999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.6E-20 | 116 | 160 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.9E-20 | 117 | 157 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.8E-23 | 168 | 219 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.0E-23 | 173 | 218 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.0E-7 | 259 | 280 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 259 | 279 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-5 | 259 | 280 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.698 | 279 | 342 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-20 | 280 | 354 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-13 | 281 | 346 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-28 | 284 | 343 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.39E-13 | 291 | 343 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 299 | 338 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 317 | 340 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDELLYGTLH STSVDYSLQQ QQQEAALGNM VSWGSYQNNN NNNNNNNDDD DDDDNIEAYG 60 GEHEIGNISA VYGSEPEQMG SGNNSSSSSD AASSLMVAVA EIQRNNTTSS EEQVSSAIRA 120 QIASHPLYPK LLQAYIDCQK VGASPEIANV LDDIRREGDV SNRNWVVSSC CWGADPELDE 180 FMETYCDILV KYKSDLSKPY DEASSFLNNM ETQLSNLCNV VSRSHGSDEA DPGGSWEEDL 240 SGGETEVSEC FRMPPVDRET KDNLIRKYGG YISTLKHEFS KKKKKGKLPK EARQILFDWW 300 NLHYNWPYPT EADKVALAES TGLDQRQINN WFINQRKRHW KPSESVQFNL MDSVCGPIVI 360 ND* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477546.2 | 0.0 | homeobox protein knotted-1-like 6 isoform X2 | ||||
Swissprot | Q84JS6 | 1e-111 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2H5P4R7 | 0.0 | A0A2H5P4R7_CITUN; Uncharacterized protein | ||||
STRING | XP_006477546.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-104 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038569m |
Publications ? help Back to Top | |||
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