PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038565m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 164aa    MW: 17800.3 Da    PI: 6.9893
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038565mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.73.8e-386991100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasn      +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ 
  orange1.1g038565m   6 PCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQM 91 
                        7**************************************97......8999***************************************** PP

             DUF260  93 elallkee 100
                        +la++++e
  orange1.1g038565m  92 QLAVAQAE 99 
                        ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.8465100IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-37697IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CVFAPYFPSD DPQKFAMVHK VFGASNELPV HQRADAVSSL  60
VYEANARVRD PVYGCVGAIS YLQNQVSQLQ MQLAVAQAEI LCIQMQQDPP AVSLPTQIDH  120
HQDHDRSLLL SCSNINPQLL AAGFASSSSN AIQDPLKKES LWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4521167130LOB family transfactor Ramosa2.1
5ly0_B2e-4521167130LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425146.11e-115LOB domain-containing protein 12
SwissprotQ8LBW34e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLV4SMT01e-114V4SMT0_9ROSI; Uncharacterized protein
STRINGXP_006425146.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-73LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]