PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 370aa MW: 39139 Da PI: 8.4896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038558m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.5e-11	303	348	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq orange1.1g038558m 303 SIAERERRTRISRKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 348 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.846	297	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-14	300	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-11	301	352	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-13	302	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	303	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MYHHPSSSSS SQQNPMGPTT AAGVGGSGGL TRYVSAPGSL LRTAVDSIIG SSSPSPSPSQ 60 PSIVSSSHSH QHHHYFAGGS TTTAGGDSSP VSSFTTTEST CKVNSSNAPG NNTKSGLQRS 120 YGLNEIPQTR AASSSLLRQR SSPAGFLSHF ASETVGFSVT RETGNYNSQG RSSGGLGVSR 180 LKSQLSFTGQ DSLSQISEES ENGIDGVSSG SGRQNATHSY STASFGMDSW ENGTSIVFSA 240 PPSKRTKTLD GDIFNCLNAL DSQFTMPQTS LEMATVDNLL NIPEDSVPCK IRAKRGCATH 300 PRSIAERERR TRISRKLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQNQ VENLHKDLEH 360 CTCGCKPTS*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MYHHPSSSSS SQQNPMGPTT AAGVGGSGGL TRYVSAPGSL LRTAVDSIIG SSSPSPSPSQ  60
PSIVSSSHSH QHHHYFAGGS TTTAGGDSSP VSSFTTTEST CKVNSSNAPG NNTKSGLQRS  120
YGLNEIPQTR AASSSLLRQR SSPAGFLSHF ASETVGFSVT RETGNYNSQG RSSGGLGVSR  180
LKSQLSFTGQ DSLSQISEES ENGIDGVSSG SGRQNATHSY STASFGMDSW ENGTSIVFSA  240
PPSKRTKTLD GDIFNCLNAL DSQFTMPQTS LEMATVDNLL NIPEDSVPCK IRAKRGCATH  300
PRSIAERERR TRISRKLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQNQ VENLHKDLEH  360
CTCGCKPTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443135.1	0.0	transcription factor bHLH128 isoform X1
Refseq	XP_006478879.1	0.0	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	1e-96	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A067E9F0	0.0	A0A067E9F0_CITSI; Uncharacterized protein
STRING	XP_006478879.1	0.0	(Citrus sinensis)
STRING	XP_006443135.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038558m

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]