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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038021m | ||||||||
Common Name | CISIN_1g038021mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 676aa MW: 74152.1 Da PI: 5.8314 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 420 | 457 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + orange1.1g038021m 420 FEHflHPYPKDTDKIMLARQTGLTRSQVSNWFINARVR 457 664459******************************88 PP | |||||||
2 | BELL | 132.9 | 1e-42 | 282 | 353 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi orange1.1g038021m 282 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQI 353 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-64 | 205 | 351 | IPR006563 | POX domain |
Pfam | PF07526 | 9.4E-53 | 211 | 349 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.082 | 398 | 461 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-9 | 401 | 465 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.28E-13 | 401 | 462 | No hit | No description |
SuperFamily | SSF46689 | 2.61E-17 | 402 | 468 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-29 | 404 | 467 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 418 | 457 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MATYFTSSSN QREGTPMIYL RESLPSSYPE APVLPGNVMM YMNSGSYSDA LAGSSQQQNN 60 CIDIQSVEAS HSTPQQQEMF SNLGGTRIVE HQFNAWRDSR NEMLVMHPMG GSTGMLHGGQ 120 NLQGQGLSLS LGTQIPPGIQ MPSIPYRNPS AGFVSFLGSN SSISADNGRN GPSTDEQSRN 180 ADYLPAGTSG GNQDGKGDLS PYGMPSIARA IPSSKYLKAA QQLLDEVVNV RKALRQPDGE 240 KSQSTHEQRM NNSKDGDGGS KDVTSNTQES PSNSPNELSH AERQELQNKL TKLLSMLDEV 300 DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISR HFRCLRDAIC GQIRATRKSL 360 GEQENSENSK GVGITRLRYV DQQLRQQRAL QHLGMMQQHA WRPQRGLPES SVSILRAWLF 420 EHFLHPYPKD TDKIMLARQT GLTRSQVSNW FINARVRLWK PMVEEMYKEE FADAEMDSNS 480 SSENAAKATR GDLRASEDRE EDLQQSGSST AAERCSTGQL TESKSDRIPD IEMAGASFQN 540 ETSGEAETEY GLLKLREEQR PGVDDCNLFP DAMVPSSGGN DRFMAAAAAY HHMSELGRFG 600 SGSGVSLTLG LQNCEGGSLP MAGATHQSFV AMRDDEMYHA AASSVGTDTV DYDCINNGNR 660 QPRFSSSHLL HDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11851 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423388.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A067E6F1 | 0.0 | A0A067E6F1_CITSI; Uncharacterized protein | ||||
STRING | XP_006423388.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-134 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038021m |