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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g038007m |
| Common Name | CISIN_1g038007mg, LOC102626226 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
LBD |
| Protein Properties |
Length: 231aa MW: 24549.8 Da PI: 7.927 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g038007m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.3 | 1.4e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
+C++C+vlr++C ++C ++p++ p+ q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l
orange1.1g038007m 4 SCNGCRVLRKGCGENCSIRPCLqwiksPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95
6*************************99**************************************************************** PP
DUF260 88 eqlkaelallk 98
+q+++e++ ++
orange1.1g038007m 96 CQAAVEAVFRG 106
*****998766 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MRVSCNGCRV LRKGCGENCS IRPCLQWIKS PQCQANATLF LAKFYGRAGL VNLINAGPQD 60
LRPAIFKSLL YEACGRIVNP IYGSVGLMWS GRWHLCQAAV EAVFRGEPVT PLSSESALQA 120
GDIRHVSKDE SSAAAAAVSD KLHKVKSRRF KRSAPKPRSK PERAADAKVV EPLLDNSGGE 180
STSCDPELTQ RDSGEGDSVS VETVEATLAK TDGGADGSDV DLELSLGFGI *
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
