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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g037956m |
| Common Name | CISIN_1g037956mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
MYB |
| Protein Properties |
Length: 245aa MW: 28215.7 Da PI: 8.2015 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g037956m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.4 | 5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ +++++G +W+ +++ g+ R++k+c++rw +yl
orange1.1g037956m 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
799*****************99**********99************97 PP
|
| 2 | Myb_DNA-binding | 62.9 | 6.3e-20 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eEde ++++++qlG++ W++Ia++++ gRt++++k++w++
orange1.1g037956m 67 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHS 110
89********************.*********.***********86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MVKAGGSEKP SLRKGSWTPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY 60
LRPDIRRGNF TQEEDETIIK LHEQLGNRWS AIASRLPGRT DNEIKNHWHS RLSKKRLTKN 120
NQQQVPSVTK SLQETQTAAI FEFDEANKQN QNPPEILIAD PIPIIPNNSR EPPKVLTGCT 180
SPSPQLSADN CSSSTSYVSA NYEEIYKIQS SKVSNYDHPS ENLDELHNFW EQPFTVDTLC 240
MTMAE
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
