PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037433m
Common NameCISIN_1g037433mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 182aa    MW: 20136.2 Da    PI: 6.354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037433mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143254123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H++ H
  orange1.1g037433m 32 YECTFCKRGFTNAQALGGHMNIH 54
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-52658IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-72958No hitNo description
SMARTSM003550.00973254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4683259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDSSQKQVGS DHSSSDENEV KELDTSSAKR SYECTFCKRG FTNAQALGGH MNIHRKDRAK  60
AKQTTGPSFI TSNPMLTHED YMNPRYIAPI SSDTSRHSPV FESQRNYLRY YQPSASNPGN  120
PPDYNVPRSE SLSMMNEDQL LGANLSLGIG PSCVGEDNEV MRRGTAEEAG LDLELRLGRN  180
R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948166.11e-134zinc finger protein 11-like
TrEMBLA0A067DVW71e-133A0A067DVW7_CITSI; Uncharacterized protein
STRINGXP_006489610.11e-133(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein